PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G022200.3.p
Common NamePRUPE_ppa006295mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 420aa    MW: 45811.6 Da    PI: 7.1425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G022200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-13354399655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Prupe.6G022200.3.p 354 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 399
                         689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16351410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-13352403No hitNo description
Gene3DG3DSA:4.10.280.102.2E-15353409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-10354399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010119Biological Processregulation of stomatal movement
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MESDLQQHHH KPQQHMNSSL MRYRSAPSSY FANLDSDFCE PLFNRPSSPE TERIFARFLT  60
GEGGGNGDGG GGGTEETASH HKVTTQTNNQ QTQFMVPKVD NEAVVIQQQQ QSHLNNYSSV  120
SQGFYQSPSS KPPLPNQSLN SANEGAYSMG TSQLPSVKTG GVTNSNLIRH SSSPAGLFSH  180
MNIDVTGYAA LRGMGNYGAS NSTNEEASFS STSRLKNFSS GPPSTSGLMS PIAEIGNKRM  240
RSDNQDSRGF GDGSGNNYVT GFPIDSWDDS AMMSGDITRS TSFREDDIKA FTGLSPSETQ  300
DVEAGNRPPT LLAHHLSLPK TSAEMAAIEK FMQFQDSVPC KIRAKRGCAT HPRSIAERVR  360
RTRISERMRK LQELVPNMDK QTNTADMLDL AVEYIKDLQT QVQTLSDNRA KCTCSSKPQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205257.10.0hypothetical protein PRUPE_ppa006295mg
TrEMBLM5VZC10.0M5VZC1_PRUPE; Uncharacterized protein
STRINGGLYMA11G13960.11e-147(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-71bHLH family protein